PMID- 34475879
OWN - NLM
STAT- PubMed-not-MEDLINE
LR  - 20210904
IS  - 1664-462X (Print)
IS  - 1664-462X (Electronic)
IS  - 1664-462X (Linking)
VI  - 12
DP  - 2021
TI  - The Evolutionary Dynamics of Repetitive DNA and Its Impact on the Genome 
      Diversification in the Genus Sorghum.
PG  - 729734
LID - 10.3389/fpls.2021.729734 [doi]
LID - 729734
AB  - Polyploidization is an evolutionary event leading to structural changes of the 
      genome(s), particularly allopolyploidization, which combines different genomes of 
      distinct species. The tetraploid species, Sorghum halepense, is assumed an 
      allopolyploid species formed by hybridization between diploid S. bicolor and S. 
      propinquum. The repeat profiles of S. bicolor, S. halepense, and their relatives 
      were compared to elucidate the repeats' role in shaping their genomes. The repeat 
      frequencies and profiles of the three diploid accessions (S. bicolor, S. bicolor 
      ssp. verticilliflorum, and S. bicolor var. technicum) and two tetraploid 
      accessions (S. halepense) are similar. However, the polymorphic distribution of 
      the subtelomeric satellites preferentially enriched in the tetraploid S. 
      halepense indicates drastic genome rearrangements after the allopolyploidization 
      event. Verified by CENH3 chromatin immunoprecipitation (ChIP)-sequencing and 
      fluorescence in situ hybridization (FISH) analysis the centromeres of S. bicolor 
      are mainly composed of the abundant satellite SorSat137 (CEN38) and diverse CRMs, 
      Athila of Ty3_gypsy and Ty1_copia-SIRE long terminal repeat (LTR) retroelements. 
      A similar centromere composition was found in S. halepense. The potential 
      contribution of S. bicolor in the formation of tetraploid S. halepense is 
      discussed.
CI  - Copyright (c) 2021 Kuo, Ishii, Fuchs, Hsieh, Houben and Lin.
FAU - Kuo, Yi-Tzu
AU  - Kuo YT
AD  - Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 
      Germany.
AD  - Department of Agronomy, National Taiwan University, Taipei, Taiwan.
FAU - Ishii, Takayoshi
AU  - Ishii T
AD  - Arid Land Research Center, Tottori University, Tottori, Japan.
FAU - Fuchs, Jorg
AU  - Fuchs J
AD  - Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 
      Germany.
FAU - Hsieh, Wei-Hsun
AU  - Hsieh WH
AD  - Department of Agronomy, National Taiwan University, Taipei, Taiwan.
FAU - Houben, Andreas
AU  - Houben A
AD  - Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 
      Germany.
FAU - Lin, Yann-Rong
AU  - Lin YR
AD  - Department of Agronomy, National Taiwan University, Taipei, Taiwan.
AD  - World Vegetable Center, Tainan, Taiwan.
LA  - eng
PT  - Journal Article
DEP - 20210812
PL  - Switzerland
TA  - Front Plant Sci
JT  - Frontiers in plant science
JID - 101568200
PMC - PMC8407070
OTO - NOTNLM
OT  - CENH3
OT  - Sorghum
OT  - centromere
OT  - dryland crop
OT  - genome evolution
OT  - long terminal repeat (LTR)
OT  - satellite DNA
COIS- The authors declare that the research was conducted in the absence of any 
      commercial or financial relationships that could be construed as a potential 
      conflict of interest.
EDAT- 2021/09/04 06:00
MHDA- 2021/09/04 06:01
PMCR- 2021/01/01
CRDT- 2021/09/03 06:49
PHST- 2021/06/23 00:00 [received]
PHST- 2021/07/23 00:00 [accepted]
PHST- 2021/09/03 06:49 [entrez]
PHST- 2021/09/04 06:00 [pubmed]
PHST- 2021/09/04 06:01 [medline]
PHST- 2021/01/01 00:00 [pmc-release]
AID - 10.3389/fpls.2021.729734 [doi]
PST - epublish
SO  - Front Plant Sci. 2021 Aug 12;12:729734. doi: 10.3389/fpls.2021.729734. 
      eCollection 2021.