PMID- 34647903 OWN - NLM STAT- MEDLINE DCOM- 20220414 LR - 20220414 IS - 1479-6821 (Electronic) IS - 1351-0088 (Print) IS - 1351-0088 (Linking) VI - 29 IP - 1 DP - 2021 Nov 11 TI - The molecular characteristics of high-grade gastroenteropancreatic neuroendocrine neoplasms. PG - 1-14 LID - ERC-21-0152 [pii] LID - 10.1530/ERC-21-0152 [doi] AB - High-grade (HG) gastroenteropancreatic (GEP) neuroendocrine neoplasms (NEN) are rare but have a very poor prognosis and represent a severely understudied class of tumours. Molecular data for HG GEP-NEN are limited, and treatment strategies for the carcinoma subgroup (HG GEP-NEC) are extrapolated from small-cell lung cancer (SCLC). After pathological re-evaluation, we analysed DNA from tumours and matched blood samples from 181 HG GEP-NEN patients; 152 neuroendocrine carcinomas (NEC) and 29 neuroendocrine tumours (NET G3). Based on the sequencing of 360 cancer-related genes, we assessed mutations and copy number alterations (CNA). For NEC, frequently mutated genes were TP53 (64%), APC (28%), KRAS (22%) and BRAF (20%). RB1 was only mutated in 14%, but CNAs affecting RB1 were seen in 34%. Other frequent copy number losses were ARID1A (35%), ESR1 (25%) and ATM (31%). Frequent amplifications/gains were found in MYC (51%) and KDM5A (45%). While these molecular features had limited similarities with SCLC, we found potentially targetable alterations in 66% of the NEC samples. Mutations and CNA varied according to primary tumour site with BRAF mutations mainly seen in colon (49%), and FBXW7 mutations mainly seen in rectal cancers (25%). Eight out of 152 (5.3%) NEC were microsatellite instable (MSI). NET G3 had frequent mutations in MEN1 (21%), ATRX (17%), DAXX, SETD2 and TP53 (each 14%). We show molecular differences in HG GEP-NEN, related to morphological differentiation and site of origin. Limited similarities to SCLC and a high fraction of targetable alterations indicate a high potential for better-personalized treatments. FAU - Venizelos, Andreas AU - Venizelos A AD - K.G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen, Bergen, Norway. AD - Department of Oncology, Haukeland University Hospital, Bergen, Norway. FAU - Elvebakken, Hege AU - Elvebakken H AD - Department of Oncology, Alesund Hospital, More og Romsdal Hospital Trust, Alesund, Norway. AD - Department of Clinical and Molecular Medicine, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, Trondheim, Norway. FAU - Perren, Aurel AU - Perren A AD - Institute of Pathology, University of Bern, Bern, Switzerland. FAU - Nikolaienko, Oleksii AU - Nikolaienko O AUID- ORCID: 0000-0002-5910-4934 AD - K.G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen, Bergen, Norway. AD - Department of Oncology, Haukeland University Hospital, Bergen, Norway. FAU - Deng, Wei AU - Deng W AD - K.G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen, Bergen, Norway. AD - Department of Oncology, Haukeland University Hospital, Bergen, Norway. FAU - Lothe, Inger Marie B AU - Lothe IMB AD - Department of Pathology, Oslo University Hospital, Oslo, Norway. FAU - Couvelard, Anne AU - Couvelard A AD - Department of Pathology, Universite de Paris, Bichat Hospital, AP-HP, Paris, France. FAU - Hjortland, Geir Olav AU - Hjortland GO AD - Department of Oncology, Oslo University Hospital, Oslo, Norway. FAU - Sundlov, Anna AU - Sundlov A AD - Departmentt of Oncology, Skane University Hospital, Lund, Sweden. AD - Department of Medical Radiation Physics, Lund University, Lund, Sweden. FAU - Svensson, Johanna AU - Svensson J AD - Department of Oncology, Sahlgrenska University Hospital, Gothenburg, Sweden. FAU - Garresori, Harrish AU - Garresori H AD - Department of Oncology, Stavanger University Hospital, Stavanger, Norway. FAU - Kersten, Christian AU - Kersten C AD - Department of Research, Hospital of Southern Norway, Kristiansand, Norway. FAU - Hofsli, Eva AU - Hofsli E AD - Department of Clinical and Molecular Medicine, Faculty of Medicine and Health Sciences, Norwegian University of Science and Technology, Trondheim, Norway. AD - Department of Oncology, St.Olavs Hospital, Trondheim, Norway. FAU - Detlefsen, Sonke AU - Detlefsen S AD - Department of Pathology, Odense University Hospital, Odense, Denmark. AD - Department of Clinical Medicine, Faculty of Health Sciences, University of Southern Denmark, Odense, Denmark. FAU - Krogh, Merete AU - Krogh M AD - Department of Oncology, Odense University Hospital, Odense, Denmark. FAU - Sorbye, Halfdan AU - Sorbye H AD - Department of Oncology, Haukeland University Hospital, Bergen, Norway. AD - Department of Clinical Science, University of Bergen, Bergen, Norway. FAU - Knappskog, Stian AU - Knappskog S AD - K.G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen, Bergen, Norway. AD - Department of Oncology, Haukeland University Hospital, Bergen, Norway. LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20211111 PL - England TA - Endocr Relat Cancer JT - Endocrine-related cancer JID - 9436481 RN - EC 1.14.11.- (KDM5A protein, human) RN - EC 1.14.11.27 (Retinoblastoma-Binding Protein 2) RN - EC 2.7.11.1 (Proto-Oncogene Proteins B-raf) SB - IM MH - *Carcinoma, Neuroendocrine/genetics MH - Humans MH - *Intestinal Neoplasms/genetics/pathology MH - *Neuroendocrine Tumors/genetics/pathology MH - *Pancreatic Neoplasms/genetics/pathology MH - Proto-Oncogene Proteins B-raf MH - Retinoblastoma-Binding Protein 2 MH - *Stomach Neoplasms/genetics/pathology PMC - PMC8630776 OTO - NOTNLM OT - gastroenteropancreatic OT - genetic alterations OT - high-grade OT - molecular markers OT - neuroendocrine carcinoma OT - neuroendocrine neoplasms EDAT- 2021/10/15 06:00 MHDA- 2022/04/15 06:00 PMCR- 2021/11/30 CRDT- 2021/10/14 12:18 PHST- 2021/09/17 00:00 [received] PHST- 2021/10/14 00:00 [accepted] PHST- 2021/10/15 06:00 [pubmed] PHST- 2022/04/15 06:00 [medline] PHST- 2021/10/14 12:18 [entrez] PHST- 2021/11/30 00:00 [pmc-release] AID - ERC-21-0152 [pii] AID - 10.1530/ERC-21-0152 [doi] PST - epublish SO - Endocr Relat Cancer. 2021 Nov 11;29(1):1-14. doi: 10.1530/ERC-21-0152.