PMID- 34791062
OWN - NLM
STAT- MEDLINE
DCOM- 20230202
LR  - 20230223
IS  - 1367-4811 (Electronic)
IS  - 1367-4803 (Print)
IS  - 1367-4803 (Linking)
VI  - 38
IP  - 4
DP  - 2022 Jan 27
TI  - minoTour, real-time monitoring and analysis for nanopore sequencers.
PG  - 1133-1135
LID - 10.1093/bioinformatics/btab780 [doi]
AB  - SUMMARY: minoTour offers a Laboratory Informations Management System (LIMS) 
      system for Oxford Nanopore Technology sequencers, with real-time metrics and 
      analysis available permanently for review. Integration of unique real-time 
      automated analysis can reduce the time required to answer biological questions, 
      including mapping and classification of sequence while a run is in progress. 
      Real-time sequence data require new methods of analysis which do not wait for the 
      completion of a run and minoTour provides a framework to allow users to exploit 
      these features. AVAILABILITY AND IMPLEMENTATION: Source code and documentation 
      are available at https://github.com/LooseLab/minotourcli and 
      https://github.com/LooseLab/minotourapp. Docker images are available from 
      https://hub.docker.com/r/adoni5/, and can be installed using a preconfigured 
      docker-compose script at https://github.com/LooseLab/minotour-docker. An example 
      server is available at http://137.44.59.170. SUPPLEMENTARY INFORMATION: 
      Supplementary data are available at Bioinformatics online.
CI  - (c) The Author(s) 2021. Published by Oxford University Press.
FAU - Munro, Rory
AU  - Munro R
AD  - School of Life Sciences, Queens Medical Centre, University of Nottingham, 
      Nottingham NG7 2UH, UK.
FAU - Santos, Roberto
AU  - Santos R
AD  - School of Life Sciences, Queens Medical Centre, University of Nottingham, 
      Nottingham NG7 2UH, UK.
AD  - Microsoft Research, Sao Paulo, SP 04543-907, Brazil.
FAU - Payne, Alexander
AU  - Payne A
AD  - School of Life Sciences, Queens Medical Centre, University of Nottingham, 
      Nottingham NG7 2UH, UK.
FAU - Forey, Teri
AU  - Forey T
AD  - School of Life Sciences, Queens Medical Centre, University of Nottingham, 
      Nottingham NG7 2UH, UK.
FAU - Osei, Solomon
AU  - Osei S
AD  - Digital Research Service, Jubilee Campus, University of Nottingham, Nottingham 
      NG8 1BB, UK.
FAU - Holmes, Nadine
AU  - Holmes N
AD  - DeepSeq, School of Life Sciences, Queens Medical Centre, University of 
      Nottingham, Nottingham NG7 2UH, UK.
FAU - Loose, Matthew
AU  - Loose M
AUID- ORCID: 0000-0002-5264-0929
AD  - School of Life Sciences, Queens Medical Centre, University of Nottingham, 
      Nottingham NG7 2UH, UK.
AD  - DeepSeq, School of Life Sciences, Queens Medical Centre, University of 
      Nottingham, Nottingham NG7 2UH, UK.
LA  - eng
GR  - BB/N017099/1/BB_/Biotechnology and Biological Sciences Research Council/United 
      Kingdom
GR  - BB/R000492/1/BB_/Biotechnology and Biological Sciences Research Council/United 
      Kingdom
GR  - BB/M020061/1/BBSRC/
GR  - DSTLX-1000138444/Defence Science and Technology Laboratory/
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
PL  - England
TA  - Bioinformatics
JT  - Bioinformatics (Oxford, England)
JID - 9808944
SB  - IM
MH  - *Nanopores
MH  - Software
PMC - PMC8796371
EDAT- 2021/11/19 06:00
MHDA- 2023/02/03 06:00
PMCR- 2021/11/15
CRDT- 2021/11/18 07:15
PHST- 2021/09/17 00:00 [received]
PHST- 2021/11/05 00:00 [revised]
PHST- 2021/11/12 00:00 [accepted]
PHST- 2021/11/19 06:00 [pubmed]
PHST- 2023/02/03 06:00 [medline]
PHST- 2021/11/18 07:15 [entrez]
PHST- 2021/11/15 00:00 [pmc-release]
AID - 6428657 [pii]
AID - btab780 [pii]
AID - 10.1093/bioinformatics/btab780 [doi]
PST - ppublish
SO  - Bioinformatics. 2022 Jan 27;38(4):1133-1135. doi: 10.1093/bioinformatics/btab780.