PMID- 35161296
OWN - NLM
STAT- PubMed-not-MEDLINE
LR  - 20220219
IS  - 2223-7747 (Print)
IS  - 2223-7747 (Electronic)
IS  - 2223-7747 (Linking)
VI  - 11
IP  - 3
DP  - 2022 Jan 25
TI  - An Eruption of LTR Retrotransposons in the Autopolyploid Genomes of Chrysanthemum 
      nankingense (Asteraceae).
LID - 10.3390/plants11030315 [doi]
LID - 315
AB  - Whole genome duplication, associated with the induction of widespread genetic 
      changes, has played an important role in the evolution of many plant taxa. All 
      extant angiosperm species have undergone at least one polyploidization event, 
      forming either an auto- or allopolyploid organism. Compared with 
      allopolyploidization, however, few studies have examined autopolyploidization, 
      and few studies have focused on the response of genetic changes to 
      autopolyploidy. In the present study, newly synthesized C. nankingense 
      autotetraploids (Asteraceae) were employed to characterize the genome shock 
      following autopolyploidization. Available evidence suggested that the genetic 
      changes primarily involved the loss of old fragments and the gain of novel 
      fragments, and some novel sequences were potential long terminal repeat (LTR) 
      retrotransposons. As Ty1-copia and Ty3-gypsy elements represent the two main 
      superfamilies of LTR retrotransposons, the dynamics of Ty1-copia and Ty3-gypsy 
      were evaluated using RT-PCR, transcriptome sequencing, and LTR 
      retrotransposon-based molecular marker techniques. Additionally, fluorescence in 
      situ hybridization(FISH)results suggest that autopolyploidization might also be 
      accompanied by perturbations of LTR retrotransposons, and emergence 
      retrotransposon insertions might show more rapid divergence, resulting in 
      diploid-like behaviour, potentially accelerating the evolutionary process among 
      progenies. Our results strongly suggest a need to expand the current evolutionary 
      framework to include a genetic dimension when seeking to understand genomic shock 
      following autopolyploidization in Asteraceae.
FAU - He, Jun
AU  - He J
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
FAU - Yu, Zhongyu
AU  - Yu Z
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
FAU - Jiang, Jiafu
AU  - Jiang J
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
FAU - Chen, Sumei
AU  - Chen S
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
FAU - Fang, Weimin
AU  - Fang W
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
FAU - Guan, Zhiyong
AU  - Guan Z
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
FAU - Liao, Yuan
AU  - Liao Y
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
FAU - Wang, Zhenxing
AU  - Wang Z
AUID- ORCID: 0000-0001-5102-7121
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
FAU - Chen, Fadi
AU  - Chen F
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
FAU - Wang, Haibin
AU  - Wang H
AD  - State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory 
      of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of 
      Biology of Ornamental Plants in East China, National Forestry and Grassland 
      Administration, College of Horticulture, Nanjing Agricultural University, Nanjing 
      210095, China.
LA  - eng
GR  - 32172613/the National Natural Science Foundation of China/
PT  - Journal Article
DEP - 20220125
PL  - Switzerland
TA  - Plants (Basel)
JT  - Plants (Basel, Switzerland)
JID - 101596181
PMC - PMC8839533
OTO - NOTNLM
OT  - Asteraceae
OT  - Chrysanthemum
OT  - autopolyploidization
OT  - evolution
OT  - genome duplication
COIS- The authors declare no conflict of interest.
EDAT- 2022/02/16 06:00
MHDA- 2022/02/16 06:01
PMCR- 2022/01/25
CRDT- 2022/02/15 01:10
PHST- 2022/01/11 00:00 [received]
PHST- 2022/01/21 00:00 [revised]
PHST- 2022/01/22 00:00 [accepted]
PHST- 2022/02/15 01:10 [entrez]
PHST- 2022/02/16 06:00 [pubmed]
PHST- 2022/02/16 06:01 [medline]
PHST- 2022/01/25 00:00 [pmc-release]
AID - plants11030315 [pii]
AID - plants-11-00315 [pii]
AID - 10.3390/plants11030315 [doi]
PST - epublish
SO  - Plants (Basel). 2022 Jan 25;11(3):315. doi: 10.3390/plants11030315.