PMID- 35240029
OWN - NLM
STAT- PubMed-not-MEDLINE
LR  - 20220915
IS  - 2765-0189 (Print)
IS  - 2765-0235 (Electronic)
IS  - 2765-0189 (Linking)
VI  - 35
IP  - 9
DP  - 2022 Sep
TI  - State of the art on the physical mapping of the Y-chromosome in the Bovidae and 
      comparison with other species - A review.
PG  - 1289-1302
LID - 10.5713/ab.21.0480 [doi]
AB  - The next generation sequencing has significantly contributed to clarify the 
      genome structure of many species of zootechnical interest. However, to date, some 
      portions of the genome, especially those linked to a heterogametic nature such as 
      the Y chromosome, are difficult to assemble and many gaps are still present. It 
      is well known that the fluorescence in situ hybridization (FISH) is an excellent 
      tool for identifying genes unequivocably mapped on chromosomes. Therefore, FISH 
      can contribute to the localization of unplaced genome sequences, as well as to 
      correct assembly errors generated by comparative bioinformatics. To this end, it 
      is necessary to have starting points; therefore, in this study, we reviewed the 
      physically mapped genes on the Y chromosome of cattle, buffalo, sheep, goats, 
      pigs, horses and alpacas. A total of 208 loci were currently mapped by FISH. 89 
      were located in the malespecific region of the Y chromosome (MSY) and 119 were 
      identified in the pseudoautosomal region (PAR). The loci reported in MSY and PAR 
      were respectively: 18 and 25 in Bos taurus, 5 and 7 in Bubalus bubalis, 5 and 24 
      in Ovis aries, 5 and 19 in Capra hircus, 10 and 16 in Sus scrofa, 46 and 18 in 
      Equus caballus. While in Vicugna pacos only 10 loci are reported in the PAR 
      region. The correct knowledge and assembly of all genome sequences, including 
      those of genes mapped on the Y chromosome, will help to elucidate their 
      biological processes, as well as to discover and exploit potentially epistasis 
      effects useful for selection breeding programs.
FAU - Rossetti, Cristina
AU  - Rossetti C
AD  - Laboratory of Animal Cytogenetics and Genomics, National Research Council (CNR), 
      ISPAAM, 80056 Portici (Napoli), Italy.
FAU - Genualdo, Viviana
AU  - Genualdo V
AD  - Laboratory of Animal Cytogenetics and Genomics, National Research Council (CNR), 
      ISPAAM, 80056 Portici (Napoli), Italy.
FAU - Incarnato, Domenico
AU  - Incarnato D
AD  - Laboratory of Animal Cytogenetics and Genomics, National Research Council (CNR), 
      ISPAAM, 80056 Portici (Napoli), Italy.
FAU - Mottola, Filomena
AU  - Mottola F
AD  - Department of Environmental, Biological and Pharmaceutical Sciences and 
      Technologies, University of Campania "Luigi Vanvitelli", 81100 Caserta, Italy.
FAU - Perucatti, Angela
AU  - Perucatti A
AD  - Laboratory of Animal Cytogenetics and Genomics, National Research Council (CNR), 
      ISPAAM, 80056 Portici (Napoli), Italy.
FAU - Pauciullo, Alfredo
AU  - Pauciullo A
AD  - Department of Agricultural, Forest and Food Sciences, University of Turin, 10095 
      Grugliasco (TO), Italy.
LA  - eng
GR  - PAUA_ RIC_N_COMP_21_01/RIS Bufala/
PT  - Journal Article
DEP - 20220302
PL  - Korea (South)
TA  - Anim Biosci
JT  - Animal bioscience
JID - 101774366
PMC - PMC9449390
OTO - NOTNLM
OT  - Bovidae
OT  - Fluorescence In situ Hybridization
OT  - Genes
OT  - Y-chromosome
COIS- CONFLICT OF INTEREST We certify that there is no conflict of interest with any 
      financial organization regarding the material discussed in the manuscript.
EDAT- 2022/03/04 06:00
MHDA- 2022/03/04 06:01
PMCR- 2022/09/01
CRDT- 2022/03/03 18:30
PHST- 2021/10/22 00:00 [received]
PHST- 2022/02/01 00:00 [accepted]
PHST- 2022/03/04 06:00 [pubmed]
PHST- 2022/03/04 06:01 [medline]
PHST- 2022/03/03 18:30 [entrez]
PHST- 2022/09/01 00:00 [pmc-release]
AID - ab.21.0480 [pii]
AID - ab-21-0480 [pii]
AID - 10.5713/ab.21.0480 [doi]
PST - ppublish
SO  - Anim Biosci. 2022 Sep;35(9):1289-1302. doi: 10.5713/ab.21.0480. Epub 2022 Mar 2.