PMID- 37010434 OWN - NLM STAT- MEDLINE DCOM- 20230427 LR - 20231019 IS - 2150-7511 (Electronic) VI - 14 IP - 2 DP - 2023 Apr 25 TI - Genome-Wide CRISPR-Cas9 Screen Identifies SMCHD1 as a Restriction Factor for Herpesviruses. PG - e0054923 LID - 10.1128/mbio.00549-23 [doi] LID - e00549-23 AB - Intrinsic immunity is the frontline of host defense against invading pathogens. To combat viral infection, mammalian hosts deploy cell-intrinsic effectors to block viral replication prior to the onset of innate and adaptive immunity. In this study, SMCHD1 is identified as a pivotal cellular factor that restricts Kaposi's sarcoma-associated herpesvirus (KSHV) lytic reactivation through a genome-wide CRISPR-Cas9 knockout screen. Genome-wide chromatin profiling revealed that SMCHD1 associates with the KSHV genome, most prominently the origin of lytic DNA replication (ORI-Lyt). SMCHD1 mutants defective in DNA binding could not bind ORI-Lyt and failed to restrict KSHV lytic replication. Moreover, SMCHD1 functioned as a pan-herpesvirus restriction factor that potently suppressed a wide range of herpesviruses, including alpha, beta, and gamma subfamilies. SMCHD1 deficiency facilitated the replication of a murine herpesvirus in vivo. These findings uncovered SMCHD1 as a restriction factor against herpesviruses, and this could be harnessed for the development of antiviral therapies to limit viral infection. IMPORTANCE Intrinsic immunity represents the frontline of host defense against invading pathogens. However, our understanding of cell-intrinsic antiviral effectors remains limited. In this study, we identified SMCHD1 as a cell-intrinsic restriction factor that controlled KSHV lytic reactivation. Moreover, SMCHD1 restricted the replication of a wide range of herpesviruses by targeting the origins of viral DNA replication (ORIs), and SMCHD1 deficiency facilitated the replication of a murine herpesvirus in vivo. This study helps us to better understand intrinsic antiviral immunity, which may be harnessed to develop new therapeutics for the treatment of herpesvirus infection and the related diseases. FAU - Tian, Xuezhang AU - Tian X AD - State Key Laboratory Breeding Base of Basic Science of Stomatology & Key Laboratory of Oral Biomedicine Ministry of Education, School & Hospital of Stomatology, State Key Laboratory of Virology, Medical Research Institute, Wuhan University, Wuhan, China. AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. AD - Department of Pulmonary and Critical Care Medicine, Zhongnan Hospital of Wuhan University, Wuhan, China. AD - Wuhan Research Center for Infectious Diseases and Cancer, Chinese Academy of Medical Sciences, Wuhan, China. FAU - Zhou, Yaru AU - Zhou Y AD - State Key Laboratory Breeding Base of Basic Science of Stomatology & Key Laboratory of Oral Biomedicine Ministry of Education, School & Hospital of Stomatology, State Key Laboratory of Virology, Medical Research Institute, Wuhan University, Wuhan, China. AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. FAU - Wang, Shaowei AU - Wang S AD - State Key Laboratory Breeding Base of Basic Science of Stomatology & Key Laboratory of Oral Biomedicine Ministry of Education, School & Hospital of Stomatology, State Key Laboratory of Virology, Medical Research Institute, Wuhan University, Wuhan, China. AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. FAU - Gao, Ming AU - Gao M AD - State Key Laboratory Breeding Base of Basic Science of Stomatology & Key Laboratory of Oral Biomedicine Ministry of Education, School & Hospital of Stomatology, State Key Laboratory of Virology, Medical Research Institute, Wuhan University, Wuhan, China. AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. FAU - Xia, Yanlin AU - Xia Y AD - State Key Laboratory Breeding Base of Basic Science of Stomatology & Key Laboratory of Oral Biomedicine Ministry of Education, School & Hospital of Stomatology, State Key Laboratory of Virology, Medical Research Institute, Wuhan University, Wuhan, China. FAU - Li, Yangyang AU - Li Y AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. AD - State Key Laboratory of Virology, School of Life Sciences, Wuhan University, Wuhan, China. FAU - Zhong, Yunhong AU - Zhong Y AD - State Key Laboratory Breeding Base of Basic Science of Stomatology & Key Laboratory of Oral Biomedicine Ministry of Education, School & Hospital of Stomatology, State Key Laboratory of Virology, Medical Research Institute, Wuhan University, Wuhan, China. AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. FAU - Xu, Wenhao AU - Xu W AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. FAU - Bai, Lei AU - Bai L AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. AD - State Key Laboratory of Virology, School of Life Sciences, Wuhan University, Wuhan, China. FAU - Fu, Bishi AU - Fu B AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. FAU - Zhou, Yu AU - Zhou Y AUID- ORCID: 0000-0002-2102-9377 AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. AD - State Key Laboratory of Virology, School of Life Sciences, Wuhan University, Wuhan, China. FAU - Lee, Hye-Ra AU - Lee HR AD - Department of Biotechnology and Bioinformatics, College of Science and Technology, Korea University, Sejong, South Korea. AD - Department of Lab Medicine, College of Medicine, Korea University, Seoul, South Korea. FAU - Deng, Hongyu AU - Deng H AUID- ORCID: 0000-0001-6703-6313 AD - CAS Key Laboratory of Infection and Immunity, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China. AD - University of Chinese Academy of Sciences, Beijing, China. FAU - Lan, Ke AU - Lan K AUID- ORCID: 0000-0002-0384-8598 AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. AD - State Key Laboratory of Virology, School of Life Sciences, Wuhan University, Wuhan, China. FAU - Feng, Pinghui AU - Feng P AUID- ORCID: 0000-0002-8494-0205 AD - Section of Infection and Immunity, Herman Ostrow School of Dentistry, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, California, USA. FAU - Zhang, Junjie AU - Zhang J AUID- ORCID: 0000-0003-3812-3850 AD - State Key Laboratory Breeding Base of Basic Science of Stomatology & Key Laboratory of Oral Biomedicine Ministry of Education, School & Hospital of Stomatology, State Key Laboratory of Virology, Medical Research Institute, Wuhan University, Wuhan, China. AD - Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China. AD - Department of Pulmonary and Critical Care Medicine, Zhongnan Hospital of Wuhan University, Wuhan, China. AD - Wuhan Research Center for Infectious Diseases and Cancer, Chinese Academy of Medical Sciences, Wuhan, China. LA - eng GR - R01 CA221521/CA/NCI NIH HHS/United States GR - R21 AI134105/AI/NIAID NIH HHS/United States GR - R35 DE027556/DE/NIDCR NIH HHS/United States GR - R01 DE026003/DE/NIDCR NIH HHS/United States PT - Journal Article PT - Research Support, N.I.H., Extramural PT - Research Support, Non-U.S. Gov't DEP - 20230403 PL - United States TA - mBio JT - mBio JID - 101519231 RN - 0 (DNA, Viral) RN - 0 (SmcHD1 protein, mouse) RN - 0 (Chromosomal Proteins, Non-Histone) SB - IM MH - Mice MH - Animals MH - *Virus Replication/genetics MH - DNA Replication MH - CRISPR-Cas Systems MH - DNA, Viral/genetics MH - *Herpesvirus 8, Human/physiology MH - Gene Expression Regulation, Viral MH - Mammals/metabolism MH - Chromosomal Proteins, Non-Histone/genetics PMC - PMC10128004 OTO - NOTNLM OT - DNA replication OT - KSHV OT - Ori-Lyt OT - SMCHD1 OT - herpesvirus OT - restriction factor COIS- The authors declare no conflict of interest. EDAT- 2023/04/04 06:00 MHDA- 2023/04/27 06:42 PMCR- 2023/04/03 CRDT- 2023/04/03 10:15 PHST- 2023/04/27 06:42 [medline] PHST- 2023/04/04 06:00 [pubmed] PHST- 2023/04/03 10:15 [entrez] PHST- 2023/04/03 00:00 [pmc-release] AID - 00549-23 [pii] AID - mbio.00549-23 [pii] AID - 10.1128/mbio.00549-23 [doi] PST - ppublish SO - mBio. 2023 Apr 25;14(2):e0054923. doi: 10.1128/mbio.00549-23. Epub 2023 Apr 3.