PMID- 37225428
OWN - NLM
STAT- MEDLINE
DCOM- 20230731
LR  - 20230731
IS  - 1477-4054 (Electronic)
IS  - 1467-5463 (Linking)
VI  - 24
IP  - 4
DP  - 2023 Jul 20
TI  - DBGRU-SE: predicting drug-drug interactions based on double BiGRU and 
      squeeze-and-excitation attention mechanism.
LID - bbad184 [pii]
LID - 10.1093/bib/bbad184 [doi]
AB  - The prediction of drug-drug interactions (DDIs) is essential for the development 
      and repositioning of new drugs. Meanwhile, they play a vital role in the fields 
      of biopharmaceuticals, disease diagnosis and pharmacological treatment. This 
      article proposes a new method called DBGRU-SE for predicting DDIs. Firstly, FP3 
      fingerprints, MACCS fingerprints, Pubchem fingerprints and 1D and 2D molecular 
      descriptors are used to extract the feature information of the drugs. Secondly, 
      Group Lasso is used to remove redundant features. Then, SMOTE-ENN is applied to 
      balance the data to obtain the best feature vectors. Finally, the best feature 
      vectors are fed into the classifier combining BiGRU and squeeze-and-excitation 
      (SE) attention mechanisms to predict DDIs. After applying five-fold 
      cross-validation, The ACC values of DBGRU-SE model on the two datasets are 97.51 
      and 94.98%, and the AUC are 99.60 and 98.85%, respectively. The results showed 
      that DBGRU-SE had good predictive performance for drug-drug interactions.
CI  - (c) The Author(s) 2023. Published by Oxford University Press. All rights reserved. 
      For Permissions, please email: journals.permissions@oup.com.
FAU - Zhang, Mingxiang
AU  - Zhang M
AD  - Qingdao University of Science and Technology, China.
FAU - Gao, Hongli
AU  - Gao H
AD  - Qingdao University of Science and Technology, China.
FAU - Liao, Xin
AU  - Liao X
AD  - Qingdao University of Science and Technology, China.
FAU - Ning, Baoxing
AU  - Ning B
AD  - Qingdao University of Science and Technology, China.
FAU - Gu, Haiming
AU  - Gu H
AD  - Qingdao University of Science and Technology, China.
FAU - Yu, Bin
AU  - Yu B
AD  - Qingdao University of Science and Technology, China.
LA  - eng
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
PL  - England
TA  - Brief Bioinform
JT  - Briefings in bioinformatics
JID - 100912837
SB  - IM
MH  - *Drug Interactions
MH  - *Computational Biology/methods
OTO - NOTNLM
OT  - Group Lasso
OT  - SMOTE-ENN
OT  - double BiGRU
OT  - drug-drug interactions
OT  - squeeze-and-excitation attention mechanism
EDAT- 2023/05/25 01:07
MHDA- 2023/07/24 06:43
CRDT- 2023/05/24 21:23
PHST- 2023/01/27 00:00 [received]
PHST- 2023/04/03 00:00 [revised]
PHST- 2023/04/23 00:00 [accepted]
PHST- 2023/07/24 06:43 [medline]
PHST- 2023/05/25 01:07 [pubmed]
PHST- 2023/05/24 21:23 [entrez]
AID - 7176312 [pii]
AID - 10.1093/bib/bbad184 [doi]
PST - ppublish
SO  - Brief Bioinform. 2023 Jul 20;24(4):bbad184. doi: 10.1093/bib/bbad184.