PMID- 38064686 OWN - NLM STAT- MEDLINE DCOM- 20231229 LR - 20240301 IS - 1520-4804 (Electronic) IS - 0022-2623 (Linking) VI - 66 IP - 24 DP - 2023 Dec 28 TI - Structural Fusion of Natural and Synthetic Ligand Features Boosts RXR Agonist Potency. PG - 16762-16771 LID - 10.1021/acs.jmedchem.3c01435 [doi] AB - The retinoid X receptors (RXRs) are ligand-activated transcription factors involved in, for example, differentiation and apoptosis regulation. Currently used reference RXR agonists suffer from insufficient specificity and poor physicochemical properties, and improved tools are needed to capture the unexplored therapeutic potential of RXR. Endogenous vitamin A-derived RXR ligands and the natural product RXR agonist valerenic acid comprise acrylic acid residues with varying substitution patterns to engage the critical ionic contact with the binding site arginine. To mimic and exploit this natural ligand motif, we probed its structural fusion with synthetic RXR modulator scaffolds, which had profound effects on agonist activity and remarkably boosted potency of an oxaprozin-derived RXR agonist chemotype. Bioisosteric replacement of the acrylic acid to overcome its pan-assay interference compounds (PAINS) character enabled the development of a highly optimized RXR agonist chemical probe. FAU - Adouvi, Gustave AU - Adouvi G AD - Institute of Pharmaceutical Chemistry, Goethe University Frankfurt, 60438 Frankfurt, Germany. FAU - Nawa, Felix AU - Nawa F AD - Department of Pharmacy, Ludwig-Maximilians-Universitat Munchen, 81377 Munich, Germany. FAU - Ballarotto, Marco AU - Ballarotto M AD - Department of Pharmacy, Ludwig-Maximilians-Universitat Munchen, 81377 Munich, Germany. FAU - Ruger, Lorena Andrea AU - Ruger LA AD - Institute of Pharmaceutical Chemistry, Goethe University Frankfurt, 60438 Frankfurt, Germany. FAU - Knumann, Loris AU - Knumann L AD - Department of Pharmacy, Ludwig-Maximilians-Universitat Munchen, 81377 Munich, Germany. FAU - Kasch, Till AU - Kasch T AD - Department of Pharmacy, Ludwig-Maximilians-Universitat Munchen, 81377 Munich, Germany. FAU - Arifi, Silvia AU - Arifi S AD - Institute of Pharmaceutical Chemistry, Goethe University Frankfurt, 60438 Frankfurt, Germany. FAU - Schubert-Zsilavecz, Manfred AU - Schubert-Zsilavecz M AD - Institute of Pharmaceutical Chemistry, Goethe University Frankfurt, 60438 Frankfurt, Germany. FAU - Willems, Sabine AU - Willems S AUID- ORCID: 0000-0002-9755-3394 AD - Department of Pharmacy, Ludwig-Maximilians-Universitat Munchen, 81377 Munich, Germany. FAU - Marschner, Julian A AU - Marschner JA AD - Department of Pharmacy, Ludwig-Maximilians-Universitat Munchen, 81377 Munich, Germany. FAU - Pabel, Jorg AU - Pabel J AUID- ORCID: 0000-0002-0174-9772 AD - Department of Pharmacy, Ludwig-Maximilians-Universitat Munchen, 81377 Munich, Germany. FAU - Merk, Daniel AU - Merk D AUID- ORCID: 0000-0002-5359-8128 AD - Institute of Pharmaceutical Chemistry, Goethe University Frankfurt, 60438 Frankfurt, Germany. AD - Department of Pharmacy, Ludwig-Maximilians-Universitat Munchen, 81377 Munich, Germany. LA - eng PT - Journal Article PT - Research Support, Non-U.S. Gov't DEP - 20231208 PL - United States TA - J Med Chem JT - Journal of medicinal chemistry JID - 9716531 RN - 0 (Receptors, Retinoic Acid) RN - J94PBK7X8S (acrylic acid) RN - 0 (Ligands) RN - 0 (Acrylates) RN - 0 (Retinoid X Receptors) SB - IM MH - *Receptors, Retinoic Acid/agonists MH - Ligands MH - *Acrylates MH - Retinoid X Receptors/metabolism EDAT- 2023/12/08 18:42 MHDA- 2023/12/29 06:43 CRDT- 2023/12/08 16:43 PHST- 2023/12/29 06:43 [medline] PHST- 2023/12/08 18:42 [pubmed] PHST- 2023/12/08 16:43 [entrez] AID - 10.1021/acs.jmedchem.3c01435 [doi] PST - ppublish SO - J Med Chem. 2023 Dec 28;66(24):16762-16771. doi: 10.1021/acs.jmedchem.3c01435. Epub 2023 Dec 8.