PMID- 9191863 OWN - NLM STAT- MEDLINE DCOM- 19970707 LR - 20190815 IS - 0304-8608 (Print) IS - 0304-8608 (Linking) VI - 142 IP - 5 DP - 1997 TI - Genetic variation and phylogenetic relationships of 22 porcine reproductive and respiratory syndrome virus (PRRSV) field strains based on sequence analysis of open reading frame 5. PG - 993-1001 AB - Porcine reproductive and respiratory syndrome virus (PRRSV) strains from 13 states in the United States, Guatemala and Canada were used to compare the envelope glycoprotein gene (ORF 5) nucleotide and deduced amino acid sequences. The gene was the same size, 603 nt, for all the 22 field strains. These strains had 89-94% amino acid identity compared to reference strain VR 2332. A putative signal sequence and cleavage site between residues 31 and 32 was identified and three potential glycosylation sites were present on all but two strains. Hydrophobicity/hydrophilicity and surface probability analyses reveal a primary structure for the envelope glycoprotein (E protein) with six potential surface regions that could be antigenic sites. Similar E protein structural features are conserved for the prototype European PRRSV-Lelystad virus. FAU - Andreyev, V G AU - Andreyev VG AD - Virology Swine Research Unit, USDA, Ames, Iowa, USA. FAU - Wesley, R D AU - Wesley RD FAU - Mengeling, W L AU - Mengeling WL FAU - Vorwald, A C AU - Vorwald AC FAU - Lager, K M AU - Lager KM LA - eng SI - GENBANK/U66378 SI - GENBANK/U66379 SI - GENBANK/U66380 SI - GENBANK/U66381 SI - GENBANK/U66382 SI - GENBANK/U66383 SI - GENBANK/U66384 SI - GENBANK/U66385 SI - GENBANK/U66386 SI - GENBANK/U66387 SI - GENBANK/U66388 SI - GENBANK/U66389 SI - GENBANK/U66390 SI - GENBANK/U66391 SI - GENBANK/U66392 SI - GENBANK/U66393 SI - GENBANK/U66394 SI - GENBANK/U66395 SI - GENBANK/U66396 SI - GENBANK/U66397 SI - GENBANK/U66398 SI - GENBANK/U66399 PT - Journal Article PL - Austria TA - Arch Virol JT - Archives of virology JID - 7506870 RN - 0 (Viral Envelope Proteins) SB - IM MH - Amino Acid Sequence MH - Genetic Variation MH - Molecular Sequence Data MH - Open Reading Frames MH - Phylogeny MH - Porcine respiratory and reproductive syndrome virus/*genetics/isolation & purification MH - Viral Envelope Proteins/genetics EDAT- 1997/01/01 00:00 MHDA- 1997/01/01 00:01 CRDT- 1997/01/01 00:00 PHST- 1997/01/01 00:00 [pubmed] PHST- 1997/01/01 00:01 [medline] PHST- 1997/01/01 00:00 [entrez] AID - 10.1007/s007050050134 [doi] PST - ppublish SO - Arch Virol. 1997;142(5):993-1001. doi: 10.1007/s007050050134.