PMID- 9865942 OWN - NLM STAT- MEDLINE DCOM- 19990303 LR - 20181113 IS - 0961-8368 (Print) IS - 1469-896X (Electronic) IS - 0961-8368 (Linking) VI - 7 IP - 12 DP - 1998 Dec TI - Structural analysis of inhibitor binding to human carbonic anhydrase II. PG - 2483-9 AB - X-ray crystal structures of carbonic anhydrase II (CAII) complexed with sulfonamide inhibitors illuminate the structural determinants of high affinity binding in the nanomolar regime. The primary binding interaction is the coordination of a primary sulfonamide group to the active site zinc ion. Secondary interactions fine-tune tight binding in regions of the active site cavity >5 A away from zinc, and this work highlights three such features: (1) advantageous conformational restraints of a bicyclic thienothiazene-6-sulfonamide-1,1-dioxide inhibitor skeleton in comparison with a monocyclic 2,5-thiophenedisulfonamide skeleton; (2) optimal substituents attached to a secondary sulfonamide group targeted to interact with hydrophobic patches defined by Phe131, Leu198, and Pro202; and (3) optimal stereochemistry and configuration at the C-4 position of bicyclic thienothiazene-6-sulfonamides; the C-4 substituent can interact with His64, the catalytic proton shuttle. Structure-activity relationships rationalize affinity trends observed during the development of brinzolamide (Azopt), the newest carbonic anhydrase inhibitor approved for the treatment of glaucoma. FAU - Boriack-Sjodin, P A AU - Boriack-Sjodin PA AD - Department of Chemistry, University of Pennsylvania, Philadelphia 19104-6323, USA. FAU - Zeitlin, S AU - Zeitlin S FAU - Chen, H H AU - Chen HH FAU - Crenshaw, L AU - Crenshaw L FAU - Gross, S AU - Gross S FAU - Dantanarayana, A AU - Dantanarayana A FAU - Delgado, P AU - Delgado P FAU - May, J A AU - May JA FAU - Dean, T AU - Dean T FAU - Christianson, D W AU - Christianson DW LA - eng SI - PDB/1A42 SI - PDB/1BN1 SI - PDB/1BN3 SI - PDB/1BN4 SI - PDB/1BNM SI - PDB/1BNN SI - PDB/1BNQ SI - PDB/1BNT SI - PDB/1BNU SI - PDB/1BNV SI - PDB/1BNW PT - Journal Article PL - United States TA - Protein Sci JT - Protein science : a publication of the Protein Society JID - 9211750 RN - 0 (Carbonic Anhydrase Inhibitors) RN - 0 (Sulfonamides) RN - EC 4.2.1.1 (Carbonic Anhydrases) SB - IM MH - Binding Sites MH - Carbonic Anhydrase Inhibitors/*chemistry/*metabolism MH - Carbonic Anhydrases/*chemistry/*metabolism MH - Crystallography, X-Ray MH - Humans MH - Models, Molecular MH - Molecular Structure MH - Protein Conformation MH - Structure-Activity Relationship MH - Sulfonamides/chemistry PMC - PMC2143894 EDAT- 1998/12/29 00:00 MHDA- 1998/12/29 00:01 PMCR- 1999/06/01 CRDT- 1998/12/29 00:00 PHST- 1998/12/29 00:00 [pubmed] PHST- 1998/12/29 00:01 [medline] PHST- 1998/12/29 00:00 [entrez] PHST- 1999/06/01 00:00 [pmc-release] AID - 10.1002/pro.5560071201 [doi] PST - ppublish SO - Protein Sci. 1998 Dec;7(12):2483-9. doi: 10.1002/pro.5560071201.