LOCUS AK143675 3062 bp mRNA linear HTC 26-JUL-2016 DEFINITION Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430008I15 product:fetal Alzheimer antigen, full insert sequence. ACCESSION AK143675 VERSION AK143675.1 KEYWORDS HTC; HTC_FLI; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) PUBMED 10349636 REFERENCE 2 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10 (10), 1617-1630 (2000) PUBMED 11042159 REFERENCE 3 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10 (11), 1757-1771 (2000) PUBMED 11076861 REFERENCE 4 AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y., Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S., Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I., Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R., Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T., Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H., Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G., Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M., Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H., Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N., Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C., Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D., Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P., Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P., Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H., Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H., Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L., Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S. and Hayashizaki,Y. CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409 (6821), 685-690 (2001) PUBMED 11217851 REFERENCE 5 AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S., Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I., Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A., Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C., Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H., Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V., Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A., Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T., Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S., Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A., Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A., Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R., Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T., Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G., Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S., Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M., Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K., Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M., Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y., Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I., Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P., Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M., Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K., Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S., Rogers,J., Birney,E. and Hayashizaki,Y. CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I & II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420 (6915), 563-573 (2002) PUBMED 12466851 REFERENCE 6 AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C., Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R., Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R., Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E., Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L., Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M., Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R., Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G., di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G., Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M., Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E., Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N., Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T., Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H., Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K., Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J., Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L., Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S., Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H., Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O., Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G., Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z., Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A., Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S., Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D., Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R., Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S., Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R., Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A., Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T., Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A., Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M., Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M., Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M., Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M., Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K., Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y. CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The transcriptional landscape of the mammalian genome JOURNAL Science 309 (5740), 1559-1563 (2005) PUBMED 16141072 REFERENCE 7 AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M., Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H., Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T., Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L., Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A., Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and Wahlestedt,C. CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group (Genome Network Project Core Group); FANTOM Consortium TITLE Antisense transcription in the mammalian transcriptome JOURNAL Science 309 (5740), 1564-1566 (2005) PUBMED 16141073 REFERENCE 8 (bases 1 to 3062) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F430008I15. FEATURES Location/Qualifiers source 1..3062 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="FANTOM_DB:F430008I15" /db_xref="MGI:MGI:3552007" /db_xref="taxon:10090" /clone="F430008I15" /tissue_type="spleen" /clone_lib="RIKEN full-length enriched mouse cDNA library" /dev_stage="6 days neonate" CDS 9..>3062 /note="unnamed protein product; fetal Alzheimer antigen (MGD|MGI:2444008 GB|BC032289, evidence: BLASTN, 99%, match=2258); putative" /codon_start=1 /protein_id="BAE25490.1" /translation="MDDNGLPSSKDENVNGESQRKTVITEVTTMTSTVATESKTVIKV AKGDKQTVVSSTENCARSTVTTTTTTVTKLSTPSPDTGVDTISVKEQSKTVVTTTVTD SLTTAGSTLVTSMTVSKEYSTRDRVKLMKFSRPKKTRSGTALPSYRKFVTKSSKKSIF VLPNDDLKKLARKGGIREVPYFNYNAKPALDIWPYPSPRPTFGITWRYRLQTVKSLAG VSLMLRLLWASLRWDDMAAKAPPGGGSTRTETSETEITTTEIIKRRDVGPYGIRSEYC IRKIICPIGVPEAPKETPTPQRKGLRSSALRPKRPETPKQTGPVIIECWVAEEELELW EIRAFAERVEKEKAQAAEQQTKKRLEQQKPAVIAASTTSPANNTSSTVSPAQKVMVAP LSGSVTPGTKMVLATKVGSPATVTFQQNKNFHQTFATWVKQGQSNSGMVQVQQKVLGI IPSTTGPSQQTFTSFQPRTATVTIRPNTSASAGTTTTSQVITGPQIRPGMTVIRTPLQ QPALGKAIIRTPVVVQPGTPQQVVTQIIRGQPVSTAISAPSTASSAPVQKGLTPGAAA GPLQPSAPHSPRPQQGQVKLTMAQLTQLTQGHGGNQGLTVVIQGQGQTTGQLQLIPQG MTVLPGPGQQLMQAAMPNGTVQRFLFTPLSTSATAASSSSNSSSTTTNATAAGSGEQK QSKILPQTQVQPATTLAPTQSSSVSPAEAQPQPAQPAAQPQPQPQPPAQPEVQTQPAV SSHVPSETQPSQAQTSKPLVATQCQPQSSVQGQSPVRVQSPPLTRIRPSTPSQVTPGQ QPQVQTTASQPIPIPPPTSLQAPSQGQPQSQPQVVMKHNAVIEHLKQKKTMTPAEREE NQRMIVCNQVMKYILDKIDKEEKQAAKKRKREESVEQKRSKQNASKLSALLFKHKEQL KAEILRKRALLDKELQIQVQEELKRDLKMKREREMAQAVQANAASVPTPSVPAPVPAP APAAPPAPPRSPPPSTHSLPPAGHPTAPLPVTSQKRKREEEKDSKS" ORIGIN 1 tggtcttcat ggatgacaat ggactgcctt ccagcaaaga cgagaacgtc aatggagaat 61 cccaaagaaa gacggtcatc acagaagtca ccacaatgac atctactgtt gccacagaat 121 caaaaactgt cattaaggta gcaaaaggag acaagcaaac tgtggtttct tccacagaaa 181 attgtgccag atccacagtc acaactacca ctaccactgt gacaaagctc tccacaccct 241 ccccagacac cggtgtggat accatctctg taaaggagca gagtaaaacc gtggtcacca 301 cgacagtgac ggactccttg accactgcag gaagcacact ggtgacatct atgaccgtga 361 gcaaagagta ctccacgaga gacagggtaa agctgatgaa gttctcacga cccaagaaga 421 cccgctcagg cactgccctg ccgtcctata ggaagttcgt taccaagagc agcaaaaaga 481 gcatatttgt gttacctaat gatgacttga aaaagctggc caggaaagga gggatccggg 541 aggtccctta ctttaattat aacgcgaaac ctgccttgga tatatggcca tacccttctc 601 ctagaccgac ctttggtatc acatggaggt atagactaca gacggtaaag tccttggctg 661 gagtgagcct gatgttacgg ttgctgtggg ccagtttgag atgggatgac atggcagcca 721 aggctcctcc aggaggaggg tctacacgga cagaaacatc tgaaactgaa atcacaacca 781 ctgagataat taagaggcgt gatgtgggcc cttatggcat tcgttctgag tattgtatca 841 ggaagatcat ttgccccatt ggagttccag aagcaccaaa agaaacaccc acacctcagc 901 ggaagggcct ccgatcaagt gcacttcggc caaagagacc agagaccccc aagcagacgg 961 gccctgttat cattgagtgc tgggtagcag aagaagagct ggagctctgg gagatcaggg 1021 cttttgctga gagagtggag aaagaaaagg ctcaagcagc agagcagcag accaagaaac 1081 gtttggagca gcagaagcct gcagtcatcg cagcgtccac cacgtcccca gcaaacaaca 1141 caagcagcac tgtctctcca gcccagaagg tgatggtggc tcccttaagt ggctcggtca 1201 cccctggaac aaagatggtg ctggccacaa aagtcggctc gcctgccaca gtcacattcc 1261 agcaaaacaa gaacttccat caaacttttg ccacgtgggt gaagcaaggc cagtccaatt 1321 caggcatggt ccaggtacag cagaaggtcc tggggatcat tccatcgact acaggtccaa 1381 gccagcaaac ctttacttca ttccagccca ggactgcaac tgtcacaatt aggcccaata 1441 cctcagcctc tgcaggaacc actaccacat cacaggtgat cacagggcct cagatccgcc 1501 ctggcatgac agtgattaga acgccactcc agcagccagc actgggaaag gcgatcattc 1561 gaacaccagt ggtggtgcag ccaggcacac cccaacaagt tgtgactcaa atcatccgag 1621 gacagcctgt ttccactgcc atctctgctc caagtacagc ttcctcagca cctgtacaaa 1681 agggcttaac tccaggagca gcggctgggc ctctgcagcc ttcagcccca cacagccctc 1741 gtcctcagca agggcaggtg aagctcacca tggctcagct cactcagctc acgcagggcc 1801 atggcggcaa ccagggttta acagtagtga ttcaaggaca agggcagact actggacagt 1861 tgcagttgat acctcagggg atgacagtcc ttccagggcc agggcagcag ctcatgcaag 1921 ctgcaatgcc gaatggcacc gttcagcgtt tcctctttac cccactatca acatcagcca 1981 cggccgccag cagcagcagc aacagcagca gcaccactac taatgctaca gcagcaggct 2041 caggggaaca aaaacagagt aaaatattac cccagaccca ggtacaacca gccacaaccc 2101 tggcaccaac tcagtcatca agtgtgagtc ctgcagaagc ccagccacag cctgctcagc 2161 ctgcagcaca accccagccc cagccccagc ccccagctca gcctgaagtc cagacccagc 2221 cagctgtctc gtcccatgtc ccttctgaaa cacagccctc ccaagcacag acatctaaac 2281 ccctggttgc aacacagtgt cagcctcaga gcagtgtaca aggacagtct cctgttcgag 2341 tccagagtcc accactgact cgaatacgtc catcaactcc atcccaagtg actcctggac 2401 agcaacccca ggttcagact acagcttcac agccgattcc aattccgccc cccacatctc 2461 tgcaggcacc ttcccaaggc cagccacagt cacagcccca ggtggtgatg aagcataatg 2521 ctgtaataga acatttaaaa cagaaaaaga ccatgactcc agctgaaaga gaagaaaatc 2581 aaaggatgat tgtctgtaac caggtgatga agtatattct ggataagata gataaagaag 2641 aaaaacaggc ggccaagaaa cgcaagcggg aggagagtgt ggagcagaag cggagcaaac 2701 agaatgccag caagctctct gctctgctgt tcaaacacaa ggagcagctc aaagctgaga 2761 tcctgagaaa gagagcgctc ctggacaaag agttgcagat ccaagtgcag gaagagctga 2821 aaagagacct gaaaatgaaa cgagagaggg agatggccca ggcggtacag gccaatgctg 2881 cctcagtgcc cacaccctcc gtgccagccc ctgtgccagc gcctgcaccg gcagcccctc 2941 cagctcctcc tcgttctccg cctccctcca cacacagtct gccacctgca ggccacccca 3001 cagccccact gcctgtcact tcccagaaga ggaagcggga ggaagagaag gactctaagt 3061 cc //