PMID- 17699621
OWN - NLM
STAT- MEDLINE
DCOM- 20071019
LR  - 20220408
IS  - 0027-8424 (Print)
IS  - 1091-6490 (Electronic)
IS  - 0027-8424 (Linking)
VI  - 104
IP  - 34
DP  - 2007 Aug 21
TI  - Molecular-phylogenetic characterization of microbial community imbalances in 
      human inflammatory bowel diseases.
PG  - 13780-5
AB  - The two primary human inflammatory bowel diseases, Crohn's disease (CD) and 
      ulcerative colitis (UC), are idiopathic relapsing disorders characterized by 
      chronic inflammation of the intestinal tract. Although several lines of reasoning 
      suggest that gastrointestinal (GI) microbes influence inflammatory bowel disease 
      (IBD) pathogenesis, the types of microbes involved have not been adequately 
      described. Here we report the results of a culture-independent rRNA sequence 
      analysis of GI tissue samples obtained from CD and UC patients, as well as 
      non-IBD controls. Specimens were obtained through surgery from a variety of 
      intestinal sites and included both pathologically normal and abnormal states. Our 
      results provide comprehensive molecular-based analysis of the microbiota of the 
      human small intestine. Comparison of clone libraries reveals statistically 
      significant differences between the microbiotas of CD and UC patients and those 
      of non-IBD controls. Significantly, our results indicate that a subset of CD and 
      UC samples contained abnormal GI microbiotas, characterized by depletion of 
      commensal bacteria, notably members of the phyla Firmicutes and Bacteroidetes. 
      Patient stratification by GI microbiota provides further evidence that CD 
      represents a spectrum of disease states and suggests that treatment of some forms 
      of IBD may be facilitated by redress of the detected microbiological imbalances.
FAU - Frank, Daniel N
AU  - Frank DN
AD  - Department of Molecular, Cellular, and Developmental Biology, University of 
      Colorado, Boulder, CO 80309-0347, USA.
FAU - St Amand, Allison L
AU  - St Amand AL
FAU - Feldman, Robert A
AU  - Feldman RA
FAU - Boedeker, Edgar C
AU  - Boedeker EC
FAU - Harpaz, Noam
AU  - Harpaz N
FAU - Pace, Norman R
AU  - Pace NR
LA  - eng
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GR  - N01AI30055/AI/NIAID NIH HHS/United States
PT  - Journal Article
PT  - Research Support, N.I.H., Extramural
DEP - 20070815
PL  - United States
TA  - Proc Natl Acad Sci U S A
JT  - Proceedings of the National Academy of Sciences of the United States of America
JID - 7505876
RN  - 0 (RNA, Ribosomal)
SB  - IM
MH  - Humans
MH  - Inflammatory Bowel Diseases/classification/*genetics/*microbiology
MH  - Molecular Sequence Data
MH  - *Phylogeny
MH  - RNA, Ribosomal/genetics
PMC - PMC1959459
COIS- The authors declare no conflict of interest.
EDAT- 2007/08/19 09:00
MHDA- 2007/10/20 09:00
PMCR- 2008/02/21
CRDT- 2007/08/19 09:00
PHST- 2007/08/19 09:00 [pubmed]
PHST- 2007/10/20 09:00 [medline]
PHST- 2007/08/19 09:00 [entrez]
PHST- 2008/02/21 00:00 [pmc-release]
AID - 0706625104 [pii]
AID - 7406 [pii]
AID - 10.1073/pnas.0706625104 [doi]
PST - ppublish
SO  - Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13780-5. doi: 
      10.1073/pnas.0706625104. Epub 2007 Aug 15.