WS

Integration of the bioinformatics Web services

http://togows.org/entry/database/entry_id[,entry_id2,...][/field][.format]

Entry

http://togows.org/entry/database/entry_id[,entry_id2,...][/field][.format] (HTTP GET)

http://togows.org/entry/ uniprot ena ddbj nucleotide snp pubmed pdb / / . json ttl xml gff fasta

Search

http://togows.org/search/database/query+string[/offset,limit][.format] (HTTP GET)

http://togows.org/search/ uniprot ena nucleotide snp pubmed omim pdb / / , . json

Convert

http://togows.org/convert/data_source.format (HTTP POST)

% curl -O http://togows.org/entry/nucleotide/J00231
% curl http://togows.org/convert/ blast blasttable blastxml csv ddbj ena exonerate fasta genbank gff gvf hmmer hmmer3tbl megablast psl rdfxml sim4 ttl uniprot wise . ena fasta genbank gff n3 ntriples rdfxml ttl --data-binary @J00231

Help

More details and examples of the TogoWS service can be found in the help page.

Monitor

Status history of the TogoWS service can be found in the monitor page.

Reference

Toshiaki Katayama, Mitsuteru Nakao and Toshihisa Takagi: TogoWS: integrated SOAP and REST APIs for interoperable bioinformatics Web services. Nucleic Acids Research 2010, 38:W706-W711. doi:10.1093/nar/gkq386, PMID:20472643 (NAR Web Server Issue 2010)

Note

TogoWS was originally developed to realize uniformed REST services over the public REST and SOAP services provided by NCBI, EBI, DDBJ, PDB, and KEGG. Because most of those SOAP services were discontinued in 2012, we then focus on providing intuitive REST APIs, inclusion of UCSC genome databases and support for the Semantic Web.